If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ), 'gf_id' => 'HOM05D000907', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000907' ), 'data_identifier' => 'HOM05D000907', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000907', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35120' => 'bna', 'A03p38290' => 'bna', 'A05p30080' => 'bna', 'A05p35760' => 'bna', 'A09p34490' => 'bna', 'A09p34500' => 'bna', 'A10p30710' => 'bna', 'Aa31LG8G6300' => 'aar', 'Aa31LG8G810' => 'aar', 'Aa31LG9G15660' => 'aar', 'Aa31LG9G15680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1350' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2900' => 'aag', 'Actinidia00385' => 'ach', 'Actinidia14739' => 'ach', 'Actinidia18164' => 'ach', 'Actinidia30427' => 'ach', 'Ah.06g184770' => 'amhyb', 'Ah.06g192950' => 'amhyb', 'Ah.06g192960' => 'amhyb', 'Ah.12g056030' => 'amhyb', 'AL1G45910' => 'aly', 'AL1G45920' => 'aly', 'AL3G25550' => 'aly', 'AL3G32970' => 'aly', 'AL6G15520' => 'aly', 'AL7G26240' => 'aly', 'Aqoxy1G00431' => 'aox', 'Aqoxy3G02027' => 'aox', 'Aqoxy7G03112' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1WCD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9DRMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDN36T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H01E5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT5LPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9U5I9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMD2EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NBN23J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGW2TM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T10E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5C4L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWQQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5DM3W' => 'arhy', 'AT1G31820' => 'ath', 'AT1G31830' => 'ath', 'AT3G13620' => 'ath', 'AT3G19553' => 'ath', 'AT5G05630' => 'ath', 'ATR0030G013' => 'atr', 'ATR0829G031' => 'atr', 'ATR0829G187' => 'atr', 'ATR0921G005' => 'atr', 'ATR0921G008' => 'atr', 'Atru.chr3.2330' => 'acertr', 'Atru.chr5.1701' => 'acertr', 'Atru.chr5.2406' => 'acertr', 'Atru.chr5.3443' => 'acertr', 'AUR62000014' => 'cqu', 'AUR62000015' => 'cqu', 'AUR62019184' => 'cqu', 'AUR62019185' => 'cqu', 'BcaB04g18777' => 'bca', 'BcaB04g20695' => 'bca', 'BcaB06g25449' => 'bca', 'BcaB06g26015' => 'bca', 'BcaB07g32835' => 'bca', 'BcaB07g32836' => 'bca', 'BcaB07g32837' => 'bca', 'BcaB07g32838' => 'bca', 'BcaC01g03986' => 'bca', 'BcaC05g27200' => 'bca', 'BcaC05g27201' => 'bca', 'BcaC05g28464' => 'bca', 'BcaC05g29165' => 'bca', 'BcaC06g32268' => 'bca', 'BcaC06g32270' => 'bca', 'BcaC09g48921' => 'bca', 'BolC1t04421H' => 'bol', 'BolC3t16913H' => 'bol', 'BolC5t31831H' => 'bol', 'BolC5t31832H' => 'bol', 'BolC5t33273H' => 'bol', 'BolC5t34088H' => 'bol', 'BolC9t59882H' => 'bol', 'BraA01t03594Z' => 'bra', 'BraA03t12982Z' => 'bra', 'BraA05t21848Z' => 'bra', 'BraA05t22383Z' => 'bra', 'BraA09t38990Z' => 'bra', 'BraA09t38991Z' => 'bra', 'BraA10t45112Z' => 'bra', 'C01p44550' => 'bna', 'C03p46490' => 'bna', 'C05p31060' => 'bna', 'C05p31070' => 'bna', 'C05p45500' => 'bna', 'C05p54220' => 'bna', 'C09p71200' => 'bna', 'CAN.G158.16' => 'can', 'CAN.G158.17' => 'can', 'CAN.G1856.1' => 'can', 'CAN.G190.5' => 'can', 'CAN.G24.13' => 'can', 'CAN.G320.17' => 'can', 'CAN.G407.3' => 'can', 'CAN.G509.11' => 'can', 'CAN.G588.101' => 'can', 'CAN.G588.102' => 'can', 'CAN.G625.54' => 'can', 'CAN.G800.15' => 'can', 'CANSAT11G0876' => 'cansat', 'CANSAT11G1148' => 'cansat', 'CANSAT11G1278' => 'cansat', 'CANSAT11G1752' => 'cansat', 'CANSAT25G1678' => 'cansat', 'CANSAT25G2403' => 'cansat', 'CARHR031160' => 'chi', 'CARHR031170' => 'chi', 'CARHR088320' => 'chi', 'CARHR094980' => 'chi', 'CARHR207650' => 'chi', 'Carub.0001s3015' => 'cru', 'Carub.0001s3016' => 'cru', 'Carub.0003s1308' => 'cru', 'Carub.0003s1939' => 'cru', 'Carub.0006s0453' => 'cru', 'Ca_16007_v3' => 'car', 'Ca_24351_v3' => 'car', 'Ca_25097_v3' => 'car', 'Ca_27283_v3' => 'car', 'CBR_g30253' => 'cbr', 'CBR_g34596' => 'cbr', 'Cc00_g07480' => 'ccan', 'Cc01_g02540' => 'ccan', 'Cc01_g02560' => 'ccan', 'Cc02_g19660' => 'ccan', 'CDE02G1031' => 'cde', 'CDE04G1446' => 'cde', 'CDE06G0509' => 'cde', 'CDE06G1507' => 'cde', 'CDE11G0532' => 'cde', 'Cfa004648' => 'cfa', 'Cfa005287' => 'cfa', 'Cfa009599' => 'cfa', 'Cfa009600' => 'cfa', 'Cfa012606' => 'cfa', 'Cfa021020' => 'cfa', 'Ciclev10000961m.g' => 'ccl', 'Ciclev10000996m.g' => 'ccl', 'Ciclev10001087m.g' => 'ccl', 'Ciclev10001183m.g' => 'ccl', 'Ciclev10001693m.g' => 'ccl', 'Ciclev10003646m.g' => 'ccl', 'Ciclev10015109m.g' => 'ccl', 'Ciclev10018412m.g' => 'ccl', 'Ciclev10028240m.g' => 'ccl', 'Ciclev10029887m.g' => 'ccl', 'CiPaw.05G016000' => 'cil', 'CiPaw.11G103600' => 'cil', 'CiPaw.13G175100' => 'cil', 'CiPaw.14G134300' => 'cil', 'CiPaw.14G134400' => 'cil', 'ClCG02G006710' => 'cla', 'ClCG03G012010' => 'cla', 'ClCG03G012320' => 'cla', 'ClCG04G003980' => 'cla', 'ClCG07G002410' => 'cla', 'COL.COLO4_12132' => 'col', 'COL.COLO4_17380' => 'col', 'COL.COLO4_32539' => 'col', 'COL.COLO4_35018' => 'col', 'COL.COLO4_35019' => 'col', 'Cpa.g.sc106.75' => 'cpa', 'Cpa.g.sc119.72' => 'cpa', 'Cpa.g.sc119.73' => 'cpa', 'Cpa.g.sc137.9' => 'cpa', 'Cpa.g.sc14.236' => 'cpa', 'Cre06.g292350' => 'cre', 'CsaV3_1G043680' => 'csa', 'CsaV3_3G030280' => 'csa', 'CsaV3_3G030290' => 'csa', 'CsaV3_7G007920' => 'csa', 'CSS0001437' => 'camsi', 'CSS0003107' => 'camsi', 'CSS0003554' => 'camsi', 'CSS0010261' => 'camsi', 'CSS0012726' => 'camsi', 'CSS0022524' => 'camsi', 'CSS0024500' => 'camsi', 'CSS0033812' => 'camsi', 'DCAR_002198' => 'dca', 'DCAR_021962' => 'dca', 'DCAR_022818' => 'dca', 'DCAR_026675' => 'dca', 'DCAR_030825' => 'dca', 'DCAR_030895' => 'dca', 'Dinv04764' => 'din', 'Dinv13439' => 'din', 'Dinv15794' => 'din', 'Dinv23888' => 'din', 'Dinv23893' => 'din', 'Dinv41916' => 'din', 'Dinv42221' => 'din', 'Duzib052G0097' => 'dzi', 'Duzib052G0696' => 'dzi', 'Duzib132G0351' => 'dzi', 'Duzib150G0540' => 'dzi', 'Duzib168G0005' => 'dzi', 'Duzib170G0034' => 'dzi', 'Duzib170G0426' => 'dzi', 'Duzib170G0528' => 'dzi', 'Duzib187G1883' => 'dzi', 'Duzib248G0962' => 'dzi', 'ECA233G0943' => 'eca', 'ECA234G4447' => 'eca', 'ECA240G1462' => 'eca', 'ECA240G3519' => 'eca', 'ECA246G5111' => 'eca', 'EL10Ac1g00706' => 'bvu', 'EL10Ac4g10361' => 'bvu', 'EL10Ac4g10362' => 'bvu', 'EL10Ac5g11919' => 'bvu', 'Eucgr.B03617' => 'egr', 'Eucgr.D02589' => 'egr', 'Eucgr.G01271' => 'egr', 'Eucgr.I01455' => 'egr', 'Eucgr.J01804' => 'egr', 'FAN08G1679' => 'fan', 'FAN11G0035' => 'fan', 'FAN11G0207' => 'fan', 'FAN11G1200' => 'fan', 'FAN11G3548' => 'fan', 'FAN11G3702' => 'fan', 'FAN12G2726' => 'fan', 'FAN12G4125' => 'fan', 'FAN13G2993' => 'fan', 'FAN15G1915' => 'fan', 'FAN15G3557' => 'fan', 'FAN16G1609' => 'fan', 'FAN16G3389' => 'fan', 'FAN18G0608' => 'fan', 'FAN18G2571' => 'fan', 'FAN20G0833' => 'fan', 'FAN20G3049' => 'fan', 'FAN21G1326' => 'fan', 'FAN21G1865' => 'fan', 'FAN21G2517' => 'fan', 'FAN24G0108' => 'fan', 'FAN24G1180' => 'fan', 'FAN25G2190' => 'fan', 'FAN25G3622' => 'fan', 'FAN25G3666' => 'fan', 'FAN27G2367' => 'fan', 'FvH4_2g03970' => 'fve', 'FvH4_2g15680' => 'fve', 'FvH4_3g08770' => 'fve', 'FvH4_3g45240' => 'fve', 'FvH4_3g45281' => 'fve', 'FvH4_3g45290' => 'fve', 'FvH4_4g35270' => 'fve', 'FvH4_5g24050' => 'fve', 'Glyma.01G150200' => 'gma', 'Glyma.01G243100' => 'gma', 'Glyma.02G209400' => 'gma', 'Glyma.05G155500' => 'gma', 'Glyma.08G113400' => 'gma', 'Glyma.09G214300' => 'gma', 'Glyma.10G283601' => 'gma', 'Glyma.11G001366' => 'gma', 'Glyma.14G177500' => 'gma', 'Glyma.16G105500' => 'gma', 'Glyma.20G106200' => 'gma', 'Gohir.A04G118900' => 'ghi', 'Gohir.A04G131800' => 'ghi', 'Gohir.A05G000400' => 'ghi', 'Gohir.A06G103000' => 'ghi', 'Gohir.A08G079700' => 'ghi', 'Gohir.A10G067600' => 'ghi', 'Gohir.D04G160600' => 'ghi', 'Gohir.D04G168400' => 'ghi', 'Gohir.D05G000600' => 'ghi', 'Gohir.D06G111366' => 'ghi', 'Gohir.D06G111432' => 'ghi', 'Gohir.D08G089500' => 'ghi', 'Gohir.D10G107000' => 'ghi', 'Gorai.004G094200' => 'gra', 'Gorai.009G000400' => 'gra', 'Gorai.010G126800' => 'gra', 'Gorai.011G117200' => 'gra', 'Gorai.012G148400' => 'gra', 'Gorai.012G156700' => 'gra', 'GSVIVG01022798001' => 'vvi', 'GSVIVG01022799001' => 'vvi', 'GSVIVG01022800001' => 'vvi', 'GSVIVG01023972001' => 'vvi', 'GSVIVG01025423001' => 'vvi', 'GSVIVG01037860001' => 'vvi', 'HanXRQChr02g0056841' => 'han', 'HanXRQChr02g0056901' => 'han', 'HanXRQChr03g0070001' => 'han', 'HanXRQChr11g0334691' => 'han', 'HanXRQChr13g0405191' => 'han', 'HanXRQChr13g0411051' => 'han', 'HanXRQChr16g0501881' => 'han', 'HanXRQChr17g0536481' => 'han', 'Haze_02101' => 'cav', 'Haze_08045' => 'cav', 'Haze_08055' => 'cav', 'Haze_10246' => 'cav', 'Haze_22973' => 'cav', 'Hma1.2p1_0032F.1_g019180' => 'hma', 'Hma1.2p1_0196F.1_g084750' => 'hma', 'Hma1.2p1_0196F.1_g084760' => 'hma', 'Hma1.2p1_1023F.1_g248910' => 'hma', 'Hma1.2p1_1026F.1_g249440' => 'hma', 'Hma1.2p1_1026F.1_g249450' => 'hma', 'Hma1.2p1_1026F.1_g249460' => 'hma', 'Hma1.2p1_1304F.1_g274490' => 'hma', 'Hma1.2p1_1304F.1_g274500' => 'hma', 'Hma1.2p1_1304F.1_g274510' => 'hma', 'Hma1.2p1_1526F.1_g288990' => 'hma', 'Hma1.2p1_1526F.1_g289010' => 'hma', 'Hma1.2p1_2067F.1_g313075' => 'hma', 'HPP92_002457' => 'vpl', 'HPP92_007943' => 'vpl', 'HPP92_012493' => 'vpl', 'HPP92_022046' => 'vpl', 'Hund12611' => 'sun', 'Hund14331' => 'sun', 'Lalb_Chr04g0253031' => 'lal', 'Lalb_Chr05g0229411' => 'lal', 'Lalb_Chr08g0237731' => 'lal', 'Lalb_Chr13g0295001' => 'lal', 'Lalb_Chr16g0376271' => 'lal', 'Lalb_Chr16g0380721' => 'lal', 'Lalb_Chr17g0344301' => 'lal', 'Lj1g0006493' => 'lja', 'Lj1g0016443' => 'lja', 'Lj2g0008684' => 'lja', 'Lj2P725T6' => 'lonja', 'Lj4g0009592' => 'lja', 'Lj4g0009610' => 'lja', 'Lj5E342T2' => 'lonja', 'Lj5g0019814' => 'lja', 'Lj5P342T69' => 'lonja', 'Lj9A202G62' => 'lonja', 'Lj9A326T78' => 'lonja', 'Lsat_1_v5_gn_2_16880' => 'lsa', 'Lsat_1_v5_gn_3_23181' => 'lsa', 'Lsat_1_v5_gn_4_24880' => 'lsa', 'Lsat_1_v5_gn_5_143240' => 'lsa', 'Lsat_1_v5_gn_6_52101' => 'lsa', 'Lsat_1_v5_gn_6_52121' => 'lsa', 'Lsat_1_v5_gn_9_100920' => 'lsa', 'Lsat_1_v5_gn_9_111560' => 'lsa', 'Lsat_1_v5_gn_9_49820' => 'lsa', 'Manes.03G085400' => 'mes', 'Manes.03G087700' => 'mes', 'Manes.03G087800' => 'mes', 'Manes.04G070800' => 'mes', 'Manes.07G063214' => 'mes', 'Manes.10G081200' => 'mes', 'Manes.15G106600' => 'mes', 'Manes.17G003000' => 'mes', 'Mapoly0008s0046' => 'mpo', 'Mapoly0009s0049' => 'mpo', 'MBI01_g20507_MAGBIO' => 'mbi', 'MBI01_g20508_MAGBIO' => 'mbi', 'MBI01_g47227_MAGBIO' => 'mbi', 'MD03G1006600' => 'mdo', 'MD03G1006800' => 'mdo', 'MD05G1096900' => 'mdo', 'MD06G1016000' => 'mdo', 'MD06G1016400' => 'mdo', 'MD06G1016700' => 'mdo', 'MD06G1016800' => 'mdo', 'MD11G1009700' => 'mdo', 'MD11G1009900' => 'mdo', 'MD11G1010000' => 'mdo', 'MD17G1241900' => 'mdo', 'Medtr0031s0060' => 'mtr', 'Medtr1g112950' => 'mtr', 'Medtr5g005160' => 'mtr', 'Medtr5g026780' => 'mtr', 'Medtr5g064750' => 'mtr', 'Medtr8g085630' => 'mtr', 'MELO3C014206.2' => 'cme', 'MELO3C015082.2' => 'cme', 'MELO3C018511.2' => 'cme', 'MELO3C022746.2' => 'cme', 'Migut.A00546' => 'egut', 'Migut.B00058' => 'egut', 'Migut.B00425' => 'egut', 'Migut.E01353' => 'egut', 'Migut.N00571' => 'egut', 'MSTRG.13907' => 'ama', 'MSTRG.18010' => 'ama', 'MSTRG.18012' => 'ama', 'MSTRG.19974' => 'ama', 'MSTRG.20210' => 'ama', 'MSTRG.24719' => 'ama', 'MSTRG.25732' => 'ama', 'MSTRG.25733' => 'ama', 'Nitab4.5_0000030g0210' => 'nta', 'Nitab4.5_0000254g0150' => 'nta', 'Nitab4.5_0000775g0030' => 'nta', 'Nitab4.5_0001059g0150' => 'nta', 'Nitab4.5_0001105g0190' => 'nta', 'Nitab4.5_0001175g0130' => 'nta', 'Nitab4.5_0001259g0090' => 'nta', 'Nitab4.5_0004685g0110' => 'nta', 'Nitab4.5_0004867g0070' => 'nta', 'Nitab4.5_0006837g0030' => 'nta', 'Nitab4.5_0006970g0030' => 'nta', 'Nitab4.5_0009696g0020' => 'nta', 'Nitab4.5_0010530g0020' => 'nta', 'Nitab4.5_0010564g0010' => 'nta', 'Nitab4.5_0012285g0020' => 'nta', 'Nn1g02055' => 'nnu', 'Nn1g02056' => 'nnu', 'Nn1g03803' => 'nnu', 'Nn1g04715' => 'nnu', 'Nn2g15798' => 'nnu', 'Nn5g30534' => 'nnu', 'Oeu009147.1' => 'oeu', 'Oeu019184.1' => 'oeu', 'Oeu028960.1' => 'oeu', 'Oeu043318.1' => 'oeu', 'Oeu045101.2' => 'oeu', 'Oeu045102.5' => 'oeu', 'Oeu058890.1' => 'oeu', 'Oeu061371.1' => 'oeu', 'Os02g0700500' => 'osa', 'Os03g0374900' => 'osa', 'Os03g0375300' => 'osa', 'Os03g0375900' => 'osa', 'Os03g0375966' => 'osa', 'Os03g0576900' => 'osa', 'Os12g0580400' => 'osa', 'Peaxi162Scf00003g02636' => 'pax', 'Peaxi162Scf00045g00625' => 'pax', 'Peaxi162Scf00100g00023' => 'pax', 'Peaxi162Scf00100g00024' => 'pax', 'Peaxi162Scf00100g00025' => 'pax', 'Peaxi162Scf00100g00214' => 'pax', 'Peaxi162Scf00193g00006' => 'pax', 'Peaxi162Scf00260g00042' => 'pax', 'Peaxi162Scf00362g00048' => 'pax', 'Peaxi162Scf00362g00444' => 'pax', 'Peaxi162Scf01042g00022' => 'pax', 'PGR031G1908' => 'pgr', 'PGR042G0767' => 'pgr', 'PGR102G1205' => 'pgr', 'PGR102G1860' => 'pgr', 'PGR119G1139' => 'pgr', 'PGR119G1250' => 'pgr', 'PGR142G3756' => 'pgr', 'PGSC0003DMG400003415' => 'stu', 'PGSC0003DMG400005455' => 'stu', 'PGSC0003DMG400010206' => 'stu', 'PGSC0003DMG400010905' => 'stu', 'PGSC0003DMG400018459' => 'stu', 'PGSC0003DMG400026227' => 'stu', 'PGSC0003DMG400032226' => 'stu', 'PGSC0003DMG400032227' => 'stu', 'Phvul.002G052400' => 'pvu', 'Phvul.002G128000' => 'pvu', 'Phvul.002G235600' => 'pvu', 'Phvul.003G276300' => 'pvu', 'Phvul.008G177000' => 'pvu', 'Potri.001G007200' => 'ptr', 'Potri.001G007300' => 'ptr', 'Potri.001G296100' => 'ptr', 'Potri.003G103550' => 'ptr', 'Potri.003G103600' => 'ptr', 'Potri.004G178000' => 'ptr', 'Potri.009G090300' => 'ptr', 'Pp3c10_15490' => 'ppa', 'Pp3c1_21720' => 'ppa', 'Pp3c3_18940' => 'ppa', 'Pp3c5_13780' => 'ppa', 'Pp3c6_16980' => 'ppa', 'PRCOL_00005500' => 'pco', 'Prupe.5G019700' => 'ppe', 'Prupe.6G006300' => 'ppe', 'Prupe.6G006400' => 'ppe', 'Prupe.6G006500' => 'ppe', 'Prupe.8G141300' => 'ppe', 'Prupe.8G169300' => 'ppe', 'Psat2g068880' => 'psa', 'Psat2g142520' => 'psa', 'Psat4g227960' => 'psa', 'Psat5g188520' => 'psa', 'Psat7g073440' => 'psa', 'PSO017G1151' => 'pso', 'PSO170G5421' => 'pso', 'PSO339G1451' => 'pso', 'PSO349G0227' => 'pso', 'PSO356G0021' => 'pso', 'PSO384G3377' => 'pso', 'PSO541G1990' => 'pso', 'PSO541G4472' => 'pso', 'PSO675G6344' => 'pso', 'PSO675G8970' => 'pso', 'PSO732G0599' => 'pso', 'QL01p008159' => 'qlo', 'QL01p008175' => 'qlo', 'QL02p024711' => 'qlo', 'QL03p029066' => 'qlo', 'QL04p054428' => 'qlo', 'QL04p095370' => 'qlo', 'QL04p095438' => 'qlo', 'QL11p031756' => 'qlo', 'QL11p032767' => 'qlo', 'QL11p052431' => 'qlo', 'RcHm_v2.0_Chr5g0082861' => 'rch', 'RcHm_v2.0_Chr5g0082951' => 'rch', 'RcHm_v2.0_Chr5g0082961' => 'rch', 'RcHm_v2.0_Chr6g0253031' => 'rch', 'RcHm_v2.0_Chr6g0253191' => 'rch', 'RcHm_v2.0_Chr6g0278981' => 'rch', 'RcHm_v2.0_Chr7g0213541' => 'rch', 'RcHm_v2.0_Chr7g0243451' => 'rch', 'Rhsim05G0073800' => 'rsi', 'Rhsim07G0139300' => 'rsi', 'Rhsim07G0139500' => 'rsi', 'Rhsim07G0139600' => 'rsi', 'Rhsim11G0033600' => 'rsi', 'Rhsim11G0154300' => 'rsi', 'Rhsim12G0004400' => 'rsi', 'Rhsim13G0230800' => 'rsi', 'Rhsim13G0230900' => 'rsi', 'RhsimUnG0125500' => 'rsi', 'Sabra01G0005500' => 'sbr', 'Sabra01G0005600' => 'sbr', 'Sabra03G0070700' => 'sbr', 'Sabra04G0119800' => 'sbr', 'Sabra16G0185100' => 'sbr', 'SalBow1G1460' => 'sbo', 'SalBow2G3086' => 'sbo', 'SalBow3G4300' => 'sbo', 'SalBow4G0894' => 'sbo', 'SalBow5G2299' => 'sbo', 'SalBow5G3300' => 'sbo', 'SalBow6G4837' => 'sbo', 'SalBow6G5511' => 'sbo', 'SalBow8G5342' => 'sbo', 'Sc01g0007070' => 'sci', 'Sc06g0004270' => 'sci', 'Sc09g0000190' => 'sci', 'Sc14g0002560' => 'sci', 'Sed0002403' => 'sed', 'Sed0008401' => 'sed', 'Sed0011566' => 'sed', 'Sed0014090' => 'sed', 'Sed0021557' => 'sed', 'Sed0024878' => 'sed', 'Sed0026771' => 'sed', 'SEGI_00306' => 'sgi', 'SEGI_10187' => 'sgi', 'SEGI_17005' => 'sgi', 'SEGI_20566' => 'sgi', 'SEGI_21316' => 'sgi', 'SEGI_30139' => 'sgi', 'SEGI_34664' => 'sgi', 'SEGI_35261' => 'sgi', 'SEGI_36698' => 'sgi', 'SGA_v2.0_scaffold111G31363' => 'sas', 'SGA_v2.0_scaffold120G32835' => 'sas', 'SGA_v2.0_scaffold225G43019' => 'sas', 'SGA_v2.0_scaffold32G13306' => 'sas', 'SGA_v2.0_scaffold3G01661' => 'sas', 'SGA_v2.0_scaffold89G27389' => 'sas', 'SHI40453' => 'shi', 'SHI55251' => 'shi', 'SMO122G0003' => 'smo', 'SMO137G0311' => 'smo', 'SMO164G0118' => 'smo', 'SMO169G0250' => 'smo', 'SMO286G0008' => 'smo', 'Solyc01g005900.2' => 'sly', 'Solyc01g005920.3' => 'sly', 'Solyc01g034080.1' => 'sly', 'Solyc01g111800.4' => 'sly', 'Solyc08g005540.2' => 'sly', 'Solyc08g075710.3' => 'sly', 'Solyc08g078100.1' => 'sly', 'Solyc09g092420.2' => 'sly', 'Solyc10g049640.2' => 'sly', 'Sopen01g001910' => 'spe', 'Sopen01g001930' => 'spe', 'Sopen01g017580' => 'spe', 'Sopen01g053840' => 'spe', 'Sopen08g001560' => 'spe', 'Sopen08g024360' => 'spe', 'Sopen08g026600' => 'spe', 'Sopen10g020890' => 'spe', 'Sp1g27540' => 'spa', 'Sp3g11820' => 'spa', 'Sp3g17610' => 'spa', 'Sp6g37240' => 'spa', 'TAR375G0050' => 'tar', 'TAR375G0618' => 'tar', 'TAR375G0664' => 'tar', 'TAR375G0755' => 'tar', 'TAR375G1137' => 'tar', 'TAR381G1319' => 'tar', 'TAR623G1168' => 'tar', 'THA.LOC104798516' => 'tha', 'THA.LOC104798787' => 'tha', 'THA.LOC104812721' => 'tha', 'THA.LOC104814401' => 'tha', 'THA.LOC104814699' => 'tha', 'THA.LOC104822672' => 'tha', 'Thecc.01G144100' => 'tca', 'Thecc.02G055200' => 'tca', 'Thecc.02G114100' => 'tca', 'Thecc.09G209900' => 'tca', 'Thecc.09G210300' => 'tca', 'Thhalv10007456m.g' => 'esa', 'Thhalv10007550m.g' => 'esa', 'Thhalv10013376m.g' => 'esa', 'Thhalv10020631m.g' => 'esa', 'Thhalv10020694m.g' => 'esa', 'TPR.G17245' => 'tpr', 'TPR.G17776' => 'tpr', 'TPR.G24355' => 'tpr', 'TPR.G37814' => 'tpr', 'TPR.G8298' => 'tpr', 'TPR.G8473' => 'tpr', 'TWI23G1287' => 'twi', 'TWI60G0491' => 'twi', 'TWI75G0587' => 'twi', 'TWI79G1684' => 'twi', 'unitig_0.g106' => 'ugi', 'unitig_0.g2202' => 'ugi', 'unitig_0.g2203' => 'ugi', 'unitig_32.g11632' => 'ugi', 'unitig_52.g17515' => 'ugi', 'unitig_699.g19747' => 'ugi', 'unitig_8.g2959' => 'ugi', 'vmacro00054' => 'vma', 'vmacro01972' => 'vma', 'vmacro17328' => 'vma', 'vmacro22752' => 'vma', 'VMungo0251G0666' => 'vmu', 'VMungo0251G1079' => 'vmu', 'VMungo0331G0312' => 'vmu', 'VMungo0540G0976' => 'vmu', 'VMungo0647G0950' => 'vmu', 'VMungo1215G1678' => 'vmu', 'VMungo1215G1903' => 'vmu', 'Zm00001eb018200' => 'zma', 'Zm00001eb018230' => 'zma', 'Zm00001eb018250' => 'zma', 'Zm00001eb018270' => 'zma', 'Zm00001eb029960' => 'zma', 'Zm00001eb251690' => 'zma', 'Zm00001eb415450' => 'zma' ) $gf_id = 'HOM05D000907' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000907' ) $data_identifier = 'HOM05D000907' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 16, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 10, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 11, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 7, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415450' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1